The NYT published an article this week on Sen. John McCain's overwhelming confidence in his own sense of propriety.

The story came under considerable fire, particularly for its use of anonymous sources (more than 2,400 comments were attached to the story).

A key allegation is that some anonymous individuals -- sourced as former aides to McCain, who is currently the presumptive Republican nominee for president -- thought he was having an affair with a younger lobbyist whose clients had business before a committee McCain chaired.

Both McCain and the lobbyist deny they had an affair.

In response, the NYT's editors and reporters took questions from readers. More than 4,000 were sent in.

NYT public editor Clark Hoyt weighs in:

The article was notable for what it did not say: It did not say what convinced the advisers that there was a romance. It did not make clear what McCain was admitting when he acknowledged behaving inappropriately — an affair or just an association with a lobbyist that could look bad. And it did not say whether Weaver, the only on-the-record source, believed there was a romance. The Times did not offer independent proof, like the text messages between Detroit’s mayor and a female aide that The Detroit Free Press disclosed recently, or the photograph of Donna Rice sitting on Gary Hart’s lap. ...

A newspaper cannot begin a story about the all-but-certain Republican presidential nominee with the suggestion of an extramarital affair with an attractive lobbyist 31 years his junior and expect readers to focus on anything other than what most of them did. And if a newspaper is going to suggest an improper sexual affair, whether editors think that is the central point or not, it owes readers more proof than The Times was able to provide.

The stakes are just too big. As the flamboyant Edwin Edwards of Louisiana once said, “The only way I can lose this election is if I’m caught in bed with either a dead girl or a live boy.”

The pity of it is that, without the sex, The Times was on to a good story.  ...

I asked Jill Abramson, the managing editor for news, if The Times could have done the story and left out the allegation about an affair. “That would not have reflected the essential truth of why the aides were alarmed,” she said.

But what the aides believed might not have been the real truth. And if you cannot provide readers with some independent evidence, I think it is wrong to report the suppositions or concerns of anonymous aides about whether the boss is getting into the wrong bed.